PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476700
Common NameARALYDRAFT_476700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 345aa    MW: 38399.8 Da    PI: 7.0372
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476700genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.82e-701172832154
  DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsalsstklss 93 
             r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s++++++kr re            +  + sal++t++++
  476700 117 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREAsggnndddkdhSGGAGSALANTRVVN 219
             7899**********************************************************999977777776666666666666657788999******** PP

  DUF702  94 aeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
             a+s++ le+s+ lP+ev+s+avfrcv+vss++d  +++e+aYqtav+igGhvfkGiLydqG+++
  476700 220 ANSNSGLEVSQqLPQEVNSPAVFRCVKVSSIEDdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 283
             *****9998766*******************98544567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-63120282IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-28122164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.3E-27232281IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDN SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE  60
HQQQQHQQRQ HASAPANFYS FGMVPSGSSS NNNNNRSRSL YFNVVSDHEP GGFTVTRQGG  120
MNCQDCGNQA KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERLAQ LASLQHHSAS  180
SRETQNAKRL REASGGNNDD DKDHSGGAGS ALANTRVVNA NSNSGLEVSQ QLPQEVNSPA  240
VFRCVKVSSI EDDEDDQEYA YQTAVNIGGH VFKGILYDQG PDQDHNHHLN LLASTATTTN  300
VEETATKTVT GNNNNGLMLD PSSLYPAQLN SFIAGTPFFT PPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889030.10.0hypothetical protein ARALYDRAFT_476700
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLD7KSQ40.0D7KSQ4_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.2__1830__AT1G75520.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.10.0SHI-related sequence 5